QBIOS: Biological Physics Seminars

Tuesday Sept 30 3pm Halifax (2pm Toronto/Montreal) is our next qbio.ca seminar       

Please register at  https://forms.gle/isDZ7Es577b8hSeN6, if you haven’t already.  Free!

zoom: https://us02web.zoom.us/j/85194006618


2:45pm (or so) zoom room opens for testing


3:00pm: Welcome + land acknowledgement + intro


3:05 Yu Shi (Western) webpage (invited, 20min+10min Q&A) 

"Bridging nano- and mesoscale nuclear organization with correlative single molecule lattice light sheet microscopy"


3:35 Lucien Weiss (Polytechnique Montreal) webpage (20min+10) 

"Throughput or resolution, can we have both? Toward capturing the heterogeneity of cell populations at the nanoscale by 3D microscopy"


4:05 Jordan Sawchuk (SFU, group of Sivak) (contributed, 10+5) 

"Techniques and insights from differential geometry in optimal control of mesoscopic systems"


4:20 Liam Yih (UBC, group of Coombs) (10+5) 

"Finding physically-consistent simulation parameters for tethered diffusion"


4:35+ open discussion and followup-questions


Background on qbio.ca seminars


The intention is to have talks twice a year with two invited (20min+10min Q&A) and several contributed talks (10+5min). The theme is biological physics, and we intend to have at least one talk  from a Canadian group every time (see qbio.ca for more of them). We aim to have a diversity of speakers, identities, perspectives, and topics. All are welcome! Email andrew.rutenberg@me.com or aidan.brown@torontomu.ca with suggestions about talks you'd like to see and speakers you'd like to hear, to volunteer for a contributed talk, or if you'd like to be removed from the list.

Previous qbio.ca seminars:


Joel Zylerberg(York University)http://www.jzlab.orgIncorporating biophysical neuron models into modern      machine learning architectures to make digital twins of the eyes and brain


Elena Koslover(UCSD)http://koslover.ucsd.eduEmergent Architecture of Active Organelle Networks


Nico Schramma(UvAmsterdam, group of Mazi Jalaalhttps://www.fluidlab.nl)Light-induced Chloroplast-Morphodynamics in a single celled AlgaeJosh Milstein (UTM) "Learning to Count Proteins in Cells with Single-Molecule Imaging" http://www.utm.utoronto.ca/milsteinlab/


Clinton Durney (JIC (UK)) "Three-Dimensional Vertex Modelling of Drosophila Salivary Gland Invagination" https://clintondurney.github.io


Sarah Rauscher (UTM) "Molecular Simulations of Disordered and Flexible Proteins"

https://rauscher-group.physics.utoronto.ca


Paul Francois (McGill) "Timers, Sizers, Adders : evolving cell cycle control in silico"

https://www.mcgill.ca/francois-group


Gonca Erdemci-Tandogan (UofT) "Modelling biological tissues: embryonic development and tissue repair"   group of https://www.quantmorph.ca


Natasha Mhatre (UWO) "Identifying single molecule contributions in high frequency auditory amplification ininsects’https://www.natashamhatre.net


Daniel Charlebois (Alberta) https://sites.ualberta.ca/~dcharleb/ "Lattice-based simulations of yeast colony       growth under low-nutrient conditions and magnetic field exposure"


Sid Goyal (UofT) https://goyallab.wordpress.com "Statistical dynamics of tumor initiation and progression"


Steven Blaber (SFU) "Minimum-Dissipation Protocols and Optimal Free Energy Estimation"

    group of David Sivak https://www.sfu.ca/physics/sivakgroup.html


Isaac Li (UBC Okanagan) "Imaging molecular force by the fluorescence adhesion footprint"

https://people.ok.ubc.ca/isaacli/


Rachael Mansbach (Concordia) "Venomous Landscapes and Viral Trajectories:Evaluation of Free Energy       Surfaces for Disulfide-Rich Peptide Design and a Side Story about the SARS-CoV2 Spike Protein" https://www.concordia.ca/artsci/physics/research/mansbach-research-group.html


Andrew Rutenberg (Dalhousie) "The Physics of Aging and Death" rutengroup.ca


Stephanie Weber (McGill) "No membrane, no problem: Condensing bacterial organelles.”

https://weberlab.ca/


Sven van Teeffelen (UdeM/Pasteur) "Coordination of volume growth and biomass growth in bacteria” https://research.pasteur.fr/en/team/microbial-morphogenesis-and-growth/


Catherine Beauchemin "The fascinating world of defective, interfering flu virions!”

https://ithems.riken.jp/en/members/catherine-beauchemin

https://phymbie.physics.ryerson.ca


Aidan Brown "Nonequilibrium and geometric effects control mRNA localization to mitochondria” https://www.physics.ryerson.ca/aidan.brown/research.html