QBIO: Biological Physics Seminars

Wednesday March 4 (3pm Halifax , 2pm Toronto/Montreal) is our next qbio.ca seminar       

Please register at  https://forms.gle/isDZ7Es577b8hSeN6, if you haven’t already.  Free!

zoom: https://us02web.zoom.us/j/85194006618


2:45pm (or so) zoom room opens for testing


3:00pm: Welcome + land acknowledgement + intro


3:05 Megan Engel (Calgary) webpage (invited, 20min+10min Q&A) 

"Uncovering unknown free energy landscapes with differentiable simulation"


3:35 Stephanie Portet (Manitoba) webpage  (20min+10) 

“TBA”


4:05 Samira  Rasouli Koohi (UAlberta) group of Charlebois (10min+5) 

"Diffusion-mediated quantification of dose-dependent antifungal drug tolerance


4:20 Matheus Pessoa (McGill)  website, group of Reisner (10+5) 

Reversible Electrokinetic Confinement technique on-chip single molecule manipulation” 


4:35+ open discussion and followup-questions


Background on qbio.ca seminars


The intention is to have talks twice a year with two invited (20min+10min Q&A) and several contributed talks (10+5min). The theme is biological physics, and we intend to have at least one talk  from a Canadian group every time (see qbio.ca for more of them). We aim to have a diversity of speakers, identities, perspectives, and topics. All are welcome! Email andrew.rutenberg@me.com or aidan.brown@torontomu.ca with suggestions about talks you'd like to see and speakers you'd like to hear, to volunteer for a contributed talk, or if you'd like to be removed from the list.

Previous qbio.ca seminars:


Yu Shi (Western) webpage "Bridging nano- and mesoscale nuclear organization with correlative single molecule lattice light sheet microscopy"


Lucien Weiss (Polytechnique Montreal) webpage "Throughput or resolution, can we have both? Toward capturing the heterogeneity of cell populations at the nanoscale by 3D microscopy"


Jordan Sawchuk (SFU, group of Sivak) "Techniques and insights from differential geometry in optimal control of mesoscopic systems"


Liam Yih (UBC, group of Coombs) "Finding physically-consistent simulation parameters for tethered diffusion"


Joel Zylerberg(York University)http://www.jzlab.orgIncorporating biophysical neuron models into modern      machine learning architectures to make digital twins of the eyes and brain


Elena Koslover(UCSD)http://koslover.ucsd.eduEmergent Architecture of Active Organelle Networks


Nico Schramma(UvAmsterdam, group of Mazi Jalaalhttps://www.fluidlab.nl)Light-induced Chloroplast-Morphodynamics in a single celled AlgaeJosh Milstein (UTM) "Learning to Count Proteins in Cells with Single-Molecule Imaging" http://www.utm.utoronto.ca/milsteinlab/


Clinton Durney (JIC (UK)) "Three-Dimensional Vertex Modelling of Drosophila Salivary Gland Invagination" https://clintondurney.github.io


Sarah Rauscher (UTM) "Molecular Simulations of Disordered and Flexible Proteins"

https://rauscher-group.physics.utoronto.ca


Paul Francois (McGill) "Timers, Sizers, Adders : evolving cell cycle control in silico"

https://www.mcgill.ca/francois-group


Gonca Erdemci-Tandogan (UofT) "Modelling biological tissues: embryonic development and tissue repair"   group of https://www.quantmorph.ca


Natasha Mhatre (UWO) "Identifying single molecule contributions in high frequency auditory amplification ininsects’https://www.natashamhatre.net


Daniel Charlebois (Alberta) https://sites.ualberta.ca/~dcharleb/ "Lattice-based simulations of yeast colony       growth under low-nutrient conditions and magnetic field exposure"


Sid Goyal (UofT) https://goyallab.wordpress.com "Statistical dynamics of tumor initiation and progression"


Steven Blaber (SFU) "Minimum-Dissipation Protocols and Optimal Free Energy Estimation"

    group of David Sivak https://www.sfu.ca/physics/sivakgroup.html


Isaac Li (UBC Okanagan) "Imaging molecular force by the fluorescence adhesion footprint"

https://people.ok.ubc.ca/isaacli/


Rachael Mansbach (Concordia) "Venomous Landscapes and Viral Trajectories:Evaluation of Free Energy       Surfaces for Disulfide-Rich Peptide Design and a Side Story about the SARS-CoV2 Spike Protein" https://www.concordia.ca/artsci/physics/research/mansbach-research-group.html


Andrew Rutenberg (Dalhousie) "The Physics of Aging and Death" rutengroup.ca


Stephanie Weber (McGill) "No membrane, no problem: Condensing bacterial organelles.”

https://weberlab.ca/


Sven van Teeffelen (UdeM/Pasteur) "Coordination of volume growth and biomass growth in bacteria” https://research.pasteur.fr/en/team/microbial-morphogenesis-and-growth/


Catherine Beauchemin "The fascinating world of defective, interfering flu virions!”

https://ithems.riken.jp/en/members/catherine-beauchemin

https://phymbie.physics.ryerson.ca


Aidan Brown "Nonequilibrium and geometric effects control mRNA localization to mitochondria” https://www.physics.ryerson.ca/aidan.brown/research.html